| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Ross Atkins | Burton Albion | England | 79 | |
| 2 | Seb Brown | AFC Wimbledon | England | 76 | |
| 3 | Chris Lewington | Dagenham & Redbridge | England | 63 | |
| 4 | Stephen Phillips | Crewe Alexandra | England | 61 | |
| 5 | Scott Bevan | Bristol Rovers | England | 57 | |
| 6 | Barry Roche | Morecambe | Republic of Ireland | 55 | |
| 7 | Dean Brill | Barnet | England | 54 | |
| 8 | Jake Cole | Plymouth Argyle | England | 51 | |
| 9 | Robert Olejnik | Torquay United | Austria | 50 | |
| 10 | Jose Veiga | Macclesfield Town | Cape Verde | 47 | |
| 11 | Stuart Tomlinson | Port Vale | England | 45 | |
| 12 | Sam Walker | Northampton Town | England | 43 | |
| 13 | Ryan Clarke | Oxford United | England | 42 | |
| 14 | Ross Flitney | Gillingham | England | 40 | |
| 15 | David Cornell | Hereford United | Wales | 38 | |
| 16 | Matt Duke | Bradford City | England | 35 | |
| 17 | Ian Dunbavin | Accrington Stanley | England | 34 | |
| 18 | Glenn Morris | Southend United | England | 33 | |
| 19 | Jamie Young | Aldershot Town | Australia | 32 | |
| 20 | Chris Neal | Shrewsbury Town | England | 29 |
GC = Goals conceded