| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Lukasz Zaluska | Dundee United | Poland | 52 | |
| 2 | Tomas Cerny | Hamilton Academical | Czech Republic | 51 | |
| 3 | Graeme Smith | Motherwell | Scotland | 49 | |
| 4 | Alan Combe | Kilmarnock | Scotland | 43 | |
| 5 | Mark Howard | St Mirren | England | 40 | |
| 6 | Jamie Langfield | Aberdeen | Scotland | 40 | |
| 7 | Ryan Esson | Inverness Cali | Scotland | 33 | |
| 8 | Artur Boruc | Celtic | Poland | 29 | |
| 9 | Robert Olejnik | Falkirk | Austria | 28 | |
| 10 | Michael Fraser | Inverness Cali | Scotland | 26 | |
| 11 | Yves Makaba-Makalamby | Hibernian | Democratic Republic of Congo | 25 | |
| 12 | Allan McGregor | Rangers | Scotland | 22 | |
| 13 | Dani Mallo | Falkirk | Spain | 18 | |
| 14 | Marian Kello | Heart of Midlothian | Slovakia | 13 | |
| 15 | Grzegorz Szamotulski | Hibernian | Poland | 13 | |
| 16 | Janos Balogh | Heart of Midlothian | Hungary | 13 | |
| 17 | Chris Smith | St Mirren | Scotland | 11 | |
| 18 | Jamie MacDonald | Heart of Midlothian | Scotland | 9 | |
| 19 | Neil Alexander | Rangers | Scotland | 8 | |
| 20 | Scott Flinders | Falkirk | England | 7 |
GC = Goals conceded