| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Jonny Brain | Macclesfield Town | England | 77 | |
| 2 | John Danby | Chester City | England | 74 | |
| 3 | Rhys Evans | Bradford City | England | 56 | |
| 4 | Phil Barnes | Grimsby Town | England | 56 | |
| 5 | Barry Roche | Morecambe | Republic of Ireland | 56 | |
| 6 | Robert Burch | Lincoln City | England | 54 | |
| 7 | Simon Royce | Gillingham | England | 54 | |
| 8 | Paul Jones | Exeter City | England | 53 | |
| 9 | Joe Anyon | Port Vale | England | 53 | |
| 10 | Tony Roberts | Dagenham & Redbridge | Wales | 52 | |
| 11 | Kenny Arthur | Accrington Stanley | Scotland | 51 | |
| 12 | Nikki Bull | Aldershot Town | England | 50 | |
| 13 | Shwan Jalal | AFC Bournemouth | England | 46 | |
| 14 | Conrad Logan | Luton Town | Republic of Ireland | 42 | |
| 15 | Andy Warrington | Rotherham United | England | 41 | |
| 16 | Luke Daniels | Shrewsbury Town | England | 38 | |
| 17 | Wayne Brown | Bury | England | 38 | |
| 18 | Ben Hamer | Brentford | England | 35 | |
| 19 | Kevin Pilkington | Notts County | England | 35 | |
| 20 | Lee Harrison | Barnet | England | 34 |
GC = Goals conceded