| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Alex Cairns | Fleetwood Town | England | 75 | |
| 2 | Nikola Tzanev | AFC Wimbledon | New Zealand | 75 | |
| 3 | Dimitar Mitov | Cambridge United | Bulgaria | 74 | |
| 4 | Ben Garratt | Burton Albion | England | 63 | |
| 5 | Craig MacGillivray | Charlton Athletic | Scotland | 54 | |
| 6 | Dave Richards | Crewe Alexandra | Wales | 53 | |
| 7 | Gavin Bazunu | Portsmouth | Republic of Ireland | 52 | |
| 8 | Marko Marosi | Shrewsbury Town | Slovakia | 51 | |
| 9 | David Stockdale | Wycombe Wanderers | England | 51 | |
| 10 | Toby Savin | Accrington Stanley | England | 51 | |
| 11 | Bailey Peacock-Farrell | Sheffield Wednesday | Northern Ireland | 50 | |
| 12 | Michael Cooper | Plymouth Argyle | England | 50 | |
| 13 | James Trafford | Accrington Stanley | England | 48 | |
| 14 | Joshua Griffiths | Lincoln City | England | 48 | |
| 15 | Jamie Cumming | Gillingham | England | 47 | |
| 16 | Owen Evans | Cheltenham Town | Wales | 46 | |
| 17 | Pontus Dahlberg | Doncaster Rovers | Sweden | 46 | |
| 18 | Ben Amos | Wigan Athletic | England | 46 | |
| 19 | Jack Stevens | Oxford United | England | 44 | |
| 20 | Trevor Carson | Morecambe | Northern Ireland | 38 |
GC = Goals conceded