| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Glenn Morris | Crawley Town | England | 69 | |
| 2 | Scott Flinders | Cheltenham Town | England | 62 | |
| 3 | Scott P Brown | Wycombe Wanderers | England | 61 | |
| 4 | Bradley Collins | Forest Green Rovers | England | 60 | |
| 5 | David Forde | Cambridge United | Republic of Ireland | 58 | |
| 6 | Joe Day | Newport County | England | 58 | |
| 7 | Christy Pym | Exeter City | England | 55 | |
| 8 | Ben Garratt | Crewe Alexandra | England | 54 | |
| 9 | Artur Krysiak | Yeovil Town | Poland | 54 | |
| 10 | Conrad Logan | Mansfield Town | Republic of Ireland | 54 | |
| 11 | Sam Walker | Colchester United | England | 52 | |
| 12 | Barry Roche | Morecambe | Republic of Ireland | 50 | |
| 13 | Jack Bonham | Carlisle United | Republic of Ireland | 50 | |
| 14 | James McKeown | Grimsby Town | Republic of Ireland | 48 | |
| 15 | Aaron Chapman | Accrington Stanley | England | 47 | |
| 16 | Craig Ross | Barnet | England | 45 | |
| 17 | Joe Fryer | Stevenage | England | 42 | |
| 18 | Lee Burge | Coventry City | England | 42 | |
| 19 | Marek Stech | Luton Town | Czech Republic | 42 | |
| 20 | Aaron Ramsdale | Chesterfield | England | 34 |
GC = Goals conceded