| 5 | Georgios Georgiadis | Group Stage | UEFA Champions League 95/96 |
| 4 | Sotiris Kyrgiakos | First Group Stage | UEFA Champions League 01/02 |
| 3 | Giorgios Karagounis | Group Stage | UEFA Champions League 10/11 |
| 3 | Ioannis Goumas | Group Stage | UEFA Champions League 08/09 |
| 3 | Panagiotis Fyssas | First Group Stage | UEFA Champions League 01/02 |
| 3 | Jan Michaelsen | First Group Stage | UEFA Champions League 01/02 |
| 3 | Panagiotis Fyssas | First Group Stage | UEFA Champions League 00/01 |
| 2 | Stergios Marinos | Group Stage | UEFA Champions League 10/11 |
| 2 | Mate Junior Simao | Group Stage | UEFA Champions League 10/11 |
| 2 | Gilberto Silva | Group Stage | UEFA Champions League 08/09 |
| 2 | Mate Junior Simao | Group Stage | UEFA Champions League 08/09 |
| 2 | Nikos Spyropoulos | Group Stage | UEFA Champions League 08/09 |
| 2 | Dimitrios Markos | Group Stage | UEFA Champions League 95/96 |
| 2 | Marinos Ouzounidis | Group Stage | UEFA Champions League 95/96 |
| 2 | Efstratios Apostolakis | Group Stage | UEFA Champions League 95/96 |
| 2 | Vladen Milojevic | Group Stage | UEFA Champions League 98/99 |
| 2 | Ioannis Goumas | Group Stage | UEFA Champions League 98/99 |
| 2 | Erik Mykland | Group Stage | UEFA Champions League 98/99 |
| 2 | Anthony Seric | Group Stage | UEFA Champions League 05/06 |
| 2 | Sandor Torghelle | Group Stage | UEFA Champions League 05/06 |
| 2 | Rudi Skacel | Group Stage | UEFA Champions League 04/05 |
| 2 | Silvio Maric | Group Stage | UEFA Champions League 04/05 |
| 2 | Angelos Basinas | Group Stage | UEFA Champions League 04/05 |
| 2 | Loukas Vyntra | Group Stage | UEFA Champions League 04/05 |
| 2 | Markus Munch | Group Stage | UEFA Champions League 03/04 |
| 2 | Ioannis Goumas | Group Stage | UEFA Champions League 03/04 |
| 2 | Daniel Saric | Quarter-finals | UEFA Champions League 01/02 |
| 2 | Giorgios Karagounis | First Group Stage | UEFA Champions League 01/02 |
| 2 | Angelos Basinas | Second Group Stage | UEFA Champions League 01/02 |
| 2 | Mihalis Konstantinou | First Group Stage | UEFA Champions League 01/02 |
| 2 | Joonas Kolkka | Second Group Stage | UEFA Champions League 01/02 |
| 2 | Giorgios Karagounis | First Group Stage | UEFA Champions League 00/01 |
| 2 | Ioannis Goumas | Second Group Stage | UEFA Champions League 00/01 |
| 2 | Georgios Seitaridis | Second Group Stage | UEFA Champions League 00/01 |
| 2 | Leonidas Vokolos | First Group Stage | UEFA Champions League 00/01 |
| 1 | Loukas Vyntra | Group Stage | UEFA Champions League 10/11 |
| 1 | Sebastian Leto | Group Stage | UEFA Champions League 10/11 |
| 1 | Gilberto Silva | Group Stage | UEFA Champions League 10/11 |
| 1 | Elini Dimoutsos | Group Stage | UEFA Champions League 10/11 |
| 1 | Luis Garcia | Group Stage | UEFA Champions League 10/11 |
| 1 | Andreas Ivanschitz | Group Stage | UEFA Champions League 08/09 |
| 1 | Mario Galinovic | Group Stage | UEFA Champions League 08/09 |
| 1 | Dimitrios Salpingidis | Group Stage | UEFA Champions League 08/09 |
| 1 | Cleyton | Group Stage | UEFA Champions League 08/09 |
| 1 | Giorgios Karagounis | Group Stage | UEFA Champions League 08/09 |
| 1 | Josu Sarriegi | Group Stage | UEFA Champions League 08/09 |
| 1 | Georgios Kapouranis | Group Stage | UEFA Champions League 95/96 |
| 1 | Yannis Kalitzakis | Quarter-finals | UEFA Champions League 95/96 |
| 1 | Athanasios Kolitsidakis | Quarter-finals | UEFA Champions League 95/96 |
| 1 | Juan Jose Borrelli | Group Stage | UEFA Champions League 95/96 |
| 1 | Efstratios Apostolakis | Group Stage | UEFA Champions League 98/99 |
| 1 | Bledar Kola | Group Stage | UEFA Champions League 98/99 |
| 1 | Andreas Lagonikakis | Group Stage | UEFA Champions League 98/99 |
| 1 | Nasief Morris | Group Stage | UEFA Champions League 05/06 |
| 1 | Loukas Vyntra | Group Stage | UEFA Champions League 05/06 |
| 1 | Flavio Conceicao | Group Stage | UEFA Champions League 05/06 |
| 1 | Filippos Darlas | Group Stage | UEFA Champions League 05/06 |
| 1 | Ezequiel Gonzalez | Group Stage | UEFA Champions League 05/06 |
| 1 | Alexandros Tziolis | Group Stage | UEFA Champions League 05/06 |
| 1 | Mario Galinovic | Group Stage | UEFA Champions League 05/06 |
