| Goals | Players | Sections | Competition |
|---|---|---|---|
| 3 | Ciprian Marica | Group Stage | UEFA Europa League 10/11 |
| 3 | Martin Harnik | Group Stage | UEFA Europa League 10/11 |
| 2 | Vedad Ibisevic | Group Stage | UEFA Europa League 12/13 |
| 2 | Shinji Okazaki | Group Stage | UEFA Europa League 12/13 |
| 2 | Martin Harnik | Group Stage | UEFA Europa League 12/13 |
| 2 | Christian Gentner | Round of 32 | UEFA Europa League 12/13 |
| 2 | Christian Gentner | Group Stage | UEFA Europa League 10/11 |
| 2 | Timo Gebhart | Group Stage | UEFA Europa League 10/11 |
| 2 | Pavel Pogrebnyak | Group Stage | UEFA Europa League 10/11 |
| 1 | Serdar Tasci | Group Stage | UEFA Europa League 12/13 |
| 1 | Arthur Boka | Round of 32 | UEFA Europa League 12/13 |
| 1 | Tamas Hajnal | Round of 16 | UEFA Europa League 12/13 |
| 1 | Georg Niedermeier | Group Stage | UEFA Europa League 12/13 |
| 1 | Gotoku Sakai | Group Stage | UEFA Europa League 12/13 |
| 1 | Cacau | Group Stage | UEFA Europa League 10/11 |
| 1 | Zdravko Kuzmanovic | Group Stage | UEFA Europa League 10/11 |
| 1 | Sven Schipplock | Group Stage | UEFA Europa League 10/11 |
| 1 | Serdar Tasci | Group Stage | UEFA Europa League 10/11 |
UEFA Europa League 23/24 Top goal scorers