| Goals | Players | Sections | Competition |
|---|---|---|---|
| 4 | Dalibor Volas | Group Stage | UEFA Europa League 11/12 |
| 3 | Dejan Mezga | Group Stage | UEFA Europa League 13/14 |
| 3 | Robert Beric | Group Stage | UEFA Europa League 12/13 |
| 2 | Dare Vrsic | Round of 32 | UEFA Europa League 13/14 |
| 2 | Marcos Tavares | Group Stage | UEFA Europa League 13/14 |
| 2 | Marcos Tavares | Group Stage | UEFA Europa League 12/13 |
| 1 | Martin Milec | Group Stage | UEFA Europa League 13/14 |
| 1 | Ales Mertelj | Group Stage | UEFA Europa League 13/14 |
| 1 | Nusmir Fajic | Group Stage | UEFA Europa League 13/14 |
| 1 | Matic Crnic | Group Stage | UEFA Europa League 13/14 |
| 1 | Zelijko Filipovic | Group Stage | UEFA Europa League 13/14 |
| 1 | Agim Ibraimi | Group Stage | UEFA Europa League 12/13 |
| 1 | Agim Ibraimi | Group Stage | UEFA Europa League 11/12 |
UEFA Europa League 23/24 Top goal scorers