| 6 | Michael Ballack | First Group Stage | UEFA Champions League 01/02 |
| 5 | Javier Hernandez | Group Stage | UEFA Champions League 15/16 |
| 5 | Oliver Neuville | First Group Stage | UEFA Champions League 01/02 |
| 4 | Admir Mehmedi | Group Stage | UEFA Champions League 15/16 |
| 4 | Stefan Beinlich | Quarter-finals | UEFA Champions League 97/98 |
| 4 | Emerson | Group Stage | UEFA Champions League 97/98 |
| 4 | Marko Babic | First Group Stage | UEFA Champions League 02/03 |
| 4 | Ulf Kirsten | First Group Stage | UEFA Champions League 99/00 |
| 3 | Heung Min Son | Group Stage | UEFA Champions League 14/15 |
| 3 | Simon Rolfes | Group Stage | UEFA Champions League 13/14 |
| 3 | Franca | Group Stage | UEFA Champions League 04/05 |
| 3 | Dimitar Berbatov | Group Stage | UEFA Champions League 04/05 |
| 3 | Jacek Krzynowek | Group Stage | UEFA Champions League 04/05 |
| 3 | Lucio | First Group Stage | UEFA Champions League 01/02 |
| 3 | Ulf Kirsten | First Group Stage | UEFA Champions League 01/02 |
| 2 | Moussa Diaby | Group Stage | UEFA Champions League 22/23 |
| 2 | Hakan Calhanoglu | Group Stage | UEFA Champions League 15/16 |
| 2 | Hakan Calhanoglu | Group Stage | UEFA Champions League 14/15 |
| 2 | Sidney Sam | Group Stage | UEFA Champions League 13/14 |
| 2 | Omer Toprak | Group Stage | UEFA Champions League 13/14 |
| 2 | Stefan Kiessling | Group Stage | UEFA Champions League 13/14 |
| 2 | Eren Derdiyok | Group Stage | UEFA Champions League 11/12 |
| 2 | Andriy Voronin | Group Stage | UEFA Champions League 04/05 |
| 2 | Bernd Schneider | First Group Stage | UEFA Champions League 02/03 |
| 2 | Dimitar Berbatov | First Group Stage | UEFA Champions League 02/03 |
| 2 | Franca | Second Group Stage | UEFA Champions League 02/03 |
| 2 | Juan | First Group Stage | UEFA Champions League 02/03 |
| 2 | Oliver Neuville | First Group Stage | UEFA Champions League 99/00 |
| 2 | Bernd Schneider | First Group Stage | UEFA Champions League 01/02 |
| 2 | Zoltan Sebescen | First Group Stage | UEFA Champions League 01/02 |
| 2 | Dimitar Berbatov | First Group Stage | UEFA Champions League 01/02 |
| 2 | Thomas Brdaric | First Group Stage | UEFA Champions League 00/01 |
| 2 | Michael Ballack | First Group Stage | UEFA Champions League 00/01 |
| 1 | Robert Andrich | Group Stage | UEFA Champions League 22/23 |
| 1 | Callum Hudson-Odoi | Group Stage | UEFA Champions League 22/23 |
| 1 | Sven Bender | Group Stage | UEFA Champions League 19/20 |
| 1 | Kevin Volland | Group Stage | UEFA Champions League 19/20 |
| 1 | Hakan Calhanoglu | Group Stage | UEFA Champions League 16/17 |
| 1 | Julian Brandt | Group Stage | UEFA Champions League 16/17 |
| 1 | Javier Hernandez | Group Stage | UEFA Champions League 16/17 |
| 1 | Vladen Yurchenko | Group Stage | UEFA Champions League 16/17 |
| 1 | Kevin Kampl | Group Stage | UEFA Champions League 16/17 |
| 1 | Karim Bellarabi | Round of 16 | UEFA Champions League 16/17 |
| 1 | Admir Mehmedi | Group Stage | UEFA Champions League 16/17 |
| 1 | Kevin Volland | Group Stage | UEFA Champions League 16/17 |
| 1 | Kyriakos Papadopoulos | Group Stage | UEFA Champions League 15/16 |
| 1 | Kevin Kampl | Group Stage | UEFA Champions League 15/16 |
| 1 | Kyriakos Papadopoulos | Group Stage | UEFA Champions League 14/15 |
| 1 | Stefan Kiessling | Group Stage | UEFA Champions League 14/15 |
| 1 | Giulio Donati | Group Stage | UEFA Champions League 14/15 |
| 1 | Jens Hegeler | Group Stage | UEFA Champions League 13/14 |
| 1 | Lars Bender | Group Stage | UEFA Champions League 11/12 |
| 1 | Manuel Friedrich | Group Stage | UEFA Champions League 11/12 |
| 1 | Sidney Sam | Group Stage | UEFA Champions League 11/12 |
| 1 | Andre Schurrle | Group Stage | UEFA Champions League 11/12 |
| 1 | Michal Kadlec | Round of 16 | UEFA Champions League 11/12 |
| 1 | Michael Ballack | Group Stage | UEFA Champions League 11/12 |
| 1 | Stefan Kiessling | Group Stage | UEFA Champions League 11/12 |
| 1 | Karim Bellarabi | Round of 16 | UEFA Champions League 11/12 |
| 1 | Martin Frydek | Group Stage | UEFA Champions League 97/98 |
