| 6 | Krzysztof Warzycha | Group Stage | UEFA Champions League 95/96 |
| 6 | Mihalis Konstantinou | First Group Stage | UEFA Champions League 01/02 |
| 4 | Evanggelos Mantzios | Group Stage | UEFA Champions League 08/09 |
| 3 | Giorgios Karagounis | Group Stage | UEFA Champions League 08/09 |
| 3 | Ezequiel Gonzalez | Group Stage | UEFA Champions League 04/05 |
| 2 | Georgios Georgiadis | Group Stage | UEFA Champions League 95/96 |
| 2 | Markus Munch | Group Stage | UEFA Champions League 04/05 |
| 2 | Mihalis Konstantinou | Group Stage | UEFA Champions League 03/04 |
| 2 | Goran Vlaovic | First Group Stage | UEFA Champions League 01/02 |
| 2 | Giorgios Karagounis | First Group Stage | UEFA Champions League 01/02 |
| 2 | Angelos Basinas | First Group Stage | UEFA Champions League 01/02 |
| 2 | Emmanuel Olisadebe | First Group Stage | UEFA Champions League 01/02 |
| 2 | Krzysztof Warzycha | First Group Stage | UEFA Champions League 00/01 |
| 2 | Ioannis Goumas | First Group Stage | UEFA Champions League 00/01 |
| 2 | Angelos Basinas | First Group Stage | UEFA Champions League 00/01 |
| 1 | Sidney Govou | Group Stage | UEFA Champions League 10/11 |
| 1 | Cedric Kante | Group Stage | UEFA Champions League 10/11 |
| 1 | Alexandros Tziolis | Group Stage | UEFA Champions League 08/09 |
| 1 | Dimitrios Salpingidis | Group Stage | UEFA Champions League 08/09 |
| 1 | Josu Sarriegi | Group Stage | UEFA Champions League 08/09 |
| 1 | Juan Jose Borrelli | Quarter-finals | UEFA Champions League 95/96 |
| 1 | Dimitrios Markos | Group Stage | UEFA Champions League 95/96 |
| 1 | Giorgios Alexopoulos | Group Stage | UEFA Champions League 95/96 |
| 1 | Mauro | Group Stage | UEFA Champions League 98/99 |
| 1 | Leonidas Vokolos | Group Stage | UEFA Champions League 98/99 |
| 1 | Nikos Liberopoulos | Group Stage | UEFA Champions League 98/99 |
| 1 | Andreas Lagonikakis | Group Stage | UEFA Champions League 98/99 |
| 1 | Erik Mykland | Group Stage | UEFA Champions League 98/99 |
| 1 | Igor Sypniewski | Group Stage | UEFA Champions League 98/99 |
| 1 | Konstantinos Charalambides | Group Stage | UEFA Champions League 05/06 |
| 1 | Nasief Morris | Group Stage | UEFA Champions League 05/06 |
| 1 | Ezequiel Gonzalez | Group Stage | UEFA Champions League 05/06 |
| 1 | Evanggelos Mantzios | Group Stage | UEFA Champions League 05/06 |
| 1 | Emmanuel Olisadebe | Group Stage | UEFA Champions League 04/05 |
| 1 | Rudi Skacel | Group Stage | UEFA Champions League 04/05 |
| 1 | Mihalis Konstantinou | Group Stage | UEFA Champions League 04/05 |
| 1 | Dimitris Papadopoulos | Group Stage | UEFA Champions League 04/05 |
| 1 | Lucian Sanmartean | Group Stage | UEFA Champions League 04/05 |
| 1 | Angelos Basinas | Group Stage | UEFA Champions League 03/04 |
| 1 | Raimondas Zutautas | Group Stage | UEFA Champions League 03/04 |
| 1 | Pandelis Konstantinidis | Group Stage | UEFA Champions League 03/04 |
| 1 | Joonas Kolkka | Second Group Stage | UEFA Champions League 01/02 |
| 1 | Ioannis Goumas | Second Group Stage | UEFA Champions League 01/02 |
| 1 | Nikos Liberopoulos | Second Group Stage | UEFA Champions League 01/02 |
| 1 | Paulo Sousa | First Group Stage | UEFA Champions League 00/01 |
| 1 | Giorgios Karagounis | Second Group Stage | UEFA Champions League 00/01 |
| 1 | Giorgios Nasiopoulos | First Group Stage | UEFA Champions League 00/01 |
| 1 | Georgios Seitaridis | Second Group Stage | UEFA Champions League 00/01 |
