| Goals | Players | Sections | Competition |
|---|---|---|---|
| 4 | Emilio Zelaya | Group Stage | UEFA Europa League 18/19 |
| 3 | Gaston Sangoy | Group Stage | UEFA Europa League 13/14 |
| 2 | Anton Maglica | Group Stage | UEFA Europa League 18/19 |
| 2 | Sasa Markovic | Group Stage | UEFA Europa League 18/19 |
| 2 | Adrian Sardinero | Group Stage | UEFA Europa League 17/18 |
| 1 | David Faupala | Group Stage | UEFA Europa League 18/19 |
| 1 | Marios Stylianou | Group Stage | UEFA Europa League 18/19 |
| 1 | Andre Schembri | Group Stage | UEFA Europa League 17/18 |
| 1 | Emilio Zelaya | Group Stage | UEFA Europa League 17/18 |
| 1 | Hector Yuste | Group Stage | UEFA Europa League 17/18 |
| 1 | Fotis Papoulis | Group Stage | UEFA Europa League 14/15 |
| 1 | Farley | Group Stage | UEFA Europa League 14/15 |
| 1 | Marcos Gullon | Group Stage | UEFA Europa League 14/15 |
| 1 | Fotis Papoulis | Group Stage | UEFA Europa League 13/14 |
| 1 | Abraham Gneki Guie | Group Stage | UEFA Europa League 13/14 |
UEFA Europa League 23/24 Top goal scorers