| Goals | Players | Sections | Competition |
|---|---|---|---|
| 4 | Markus Schopp | First Group Stage | UEFA Champions League 00/01 |
| 3 | Tomica Kocijan | First Group Stage | UEFA Champions League 99/00 |
| 3 | Sergei Yuran | First Group Stage | UEFA Champions League 00/01 |
| 2 | Mario Haas | Second Group Stage | UEFA Champions League 00/01 |
| 1 | Ivica Vastic | Group Stage | UEFA Champions League 98/99 |
| 1 | Mario Haas | Group Stage | UEFA Champions League 98/99 |
| 1 | Ivica Vastic | First Group Stage | UEFA Champions League 99/00 |
| 1 | Roman Mahlich | First Group Stage | UEFA Champions League 99/00 |
| 1 | Markus Schupp | First Group Stage | UEFA Champions League 00/01 |
| 1 | Tomica Kocijan | Second Group Stage | UEFA Champions League 00/01 |
| 1 | Gilbert Prilasnig | First Group Stage | UEFA Champions League 00/01 |
UEFA Champions League 23/24 Top goal scorers